thanks buddy just what i thought,  i was getting worry there for a second, if they added immobilizer with pin code to ford I will have to kidnap a locksmith and put him in the trunk of my car to do my programming since i have no license for such codes. well am retiring in a month so no need to kidnap anyone.

 I don't think it will work if you just try to crank  it with out turning off ignition removing key and removing tool. After theft light  or led starts to slowly pulse put the newly programmed key back in ignition and turn the key on and wait for the theft light or led to go out, then if the key did program it should start. Once you have 2 working keys with you I think you can program a third one without having a scan tool. Never have less than 3 programmed keys for your Ford is a good rule of thumb.

     yes your right, that part was skipped. the key has to be cycle off before starting/cranking the vehicle  as it is done for every vehicle make, the reason for this is the secret code needs to be transfer from module to module and that only happens after an ignition cycle. the thing is this just about every tool tells you to remove the tool then turn key off and wait the time.but the pdf file i uploaded is correct one must wait the 20 seconds before cycling the key. even ford dealers makes this mistake all the time, I do work for a couple of them and this is the number one mistake they make. also adding additional keys can  be enable and disable from pats in which case it does not allow one to program an additional key unless enable or the key erase program. another big issue out there is with cheap transponder keys being sold everywhere like home depot, walmart etc, I have had more than a dozen calls from locksmith them self going nuts because of a bad key that checked out good with their machine or never checked, but ford doesn't like them, even ford original keys fail sometimes. I do lots of ford and replace many pcm plus the pcm people replace for no reason at all, i always carry my sbb and ck100 or ck200, either of this tool will start a ford with just one key in the event that a used pcm is installed and all you need to do is just add one key cycle key and done, next job. the problem he is having I think  it is not related to procedure but rather a bad software as i have seen it 100 times with autel tools, maybe he trys the procedure 2 or 3 more times and it works as it has been the case. a couple of weeks of week ago i tried the maxisys on a 2009 ford explorer that had the pcm replaced and neither the programming of the keys or parameter reset worked at all on this vehicle, tried every procedure on the book with no results. ford ids did it on the first try. and so would have any of the china clone key tools. that i have.

 yes that is the correct procedure. if no go autel has some explaining to do.

Yes disconnect the battery, both termimals and touch both terminals together for a few
seconds to clear cappasitors/memory connect battery insert the good key the
programmed key, make sure the vehicle starts, if it does everything is fine with the
system, turn key off, insert the unprogrammed key and connect your ck-100, enter pats
security and add one key. If this does not work there has to be a bad key. This is the
reason I don't use anything but the original ford ids, I don't trust anything else 100%. I
have used the ck-100 and 200 and never failed me though. You can read pcm data and
look at how many keys are actually programmed, there should be 3 if the last one took
programming. Since you have the ck100 you can delete all keys and proram the 2 you
have now, if they are both good it will program and start the vehicle. There is no way
to have 2 bad tool but rather something either wrong with the key or the vehicles
system.

Also you never told me if the adding costumer key option was available from pats in
your maxisys. You can go back to pats with the maxisys and enable that function if
available. The techs at the dealers love to disable that function. If is not available from
your tool but deleting all keys and programming new ones this function will be
automaticly enable. Good luck buddy hope you get it going man, am running out of
tips. Oh and I forgot pray a lot,cross your fingers and toes for at least 30 seconds lol.
Just kidding good luck.